FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927194

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927194
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439082
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48901.1136871928250305No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29150.6638851057433464No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT19170.4365927093344751No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13010.29630000774342835No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG9470.2156772539070151No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7520.1712664149293298No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA7280.16580046551669164No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7020.15987902031966694No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6630.15099685252412987No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6090.13869846634569397No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6060.1380152226691142No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5690.12958855065796365No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5480.12480584492190525No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5300.12070638286242662No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5260.11979539129365357No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4920.11205196295908282No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4540.10339754305573902No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)