FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927196

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927196
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462253
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31030.671277417345047No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22290.4822034686632645No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT19840.4292021901426275No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13410.29010087549458846No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG9570.2070294838540799No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7730.16722444202633624No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA7510.1624651435469321No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7250.15684051807127267No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7100.1535955418353153No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6840.14797091635965587No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6740.14580759886901762No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6240.1349910114158264No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5660.12244376997012459No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5540.11984778898135869No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5390.11660281274540132No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5030.10881486977910365No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4900.10600255704127394No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)