FastQCFastQC Report
Sun 21 May 2023
EGAF00007927202

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927202
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480254
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA39880.830393916552491No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24680.5138947307050019No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19390.4037446851041324No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17790.3704289813307125No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15700.3269103432766827No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC10890.2267550088078392No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10700.2227987689847456No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7920.16491273367842849No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6770.14096707159128294No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC5720.11910364098997614No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)