FastQCFastQC Report
Sun 21 May 2023
EGAF00007927204

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927204
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456122
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50721.1119831974778678No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA37360.8190791060286503No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19490.42729795975638096No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17890.39221962545108546No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15110.3312710195956345No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC9980.21880111022928075No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9490.208058370348284No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7130.15631782724797313No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6210.13614778502242822No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC5240.11488154484984281No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)