FastQCFastQC Report
Sun 21 May 2023
EGAF00007927206

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927206
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465874
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48751.0464202767271837No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA38000.8156711900642664No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18740.40225468688958815No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18400.3949565762416447No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15380.330132181662853No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9860.21164520879035964No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC9570.20542034970829023No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7530.16163168582062962No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6240.1339417954210795No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC5460.11719907099344458No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)