FastQCFastQC Report
Sun 21 May 2023
EGAF00007927228

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927228
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457502
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32110.7018548552793211No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27450.5999973770606467No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22650.49507980292982323No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16890.3691787139728351No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12470.2725671144607018No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11120.24305904673640769No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9500.2076493654672548No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8620.18841447687660381No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8270.18076423709623127No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7760.16961674484483127No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7750.16939816656539206No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7110.15540915668128227No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6830.14928896485698423No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6590.14404308615044306No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6510.14229445991492934No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6210.13573711153175289No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5820.12721255863362346No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5780.1263382455158666No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5750.12568251067754896No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5730.12524535411867052No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5700.12458961928035288No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5670.12393388444203522No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5560.12152952336820384No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5300.11584648810278426No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4800.10491757413082348No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)