FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927236

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927236
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461532
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24890.539290883405701No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24010.5202239498019638No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15460.3349713562656544No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14680.318071119662342No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA13790.2987875163585623No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG13280.2877373616563965No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12850.2784205645545704No Hit
GTCCTGGTGGTTACGGAAAATGGCTACGGTA12280.2660703916521498No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11440.24787013684858256No Hit
GATGTTGCTCACGCGAACTCCGTGGACGAAG9120.19760276643873012No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8830.1913193451374986No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8500.18416924503609716No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC7980.17290242063388886No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7900.17116906303354915No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7890.17095239333350667No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7720.16726900843278472No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7120.15426882643023668No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6650.14408535052824073No Hit
TGTGCAGCTCGCACCAAAACCGTGAACGCGG6510.1410519747276462No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6230.1349852231264571No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG6060.13130183822573516No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5900.12783512302505567No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG5870.12718511392492826No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5690.12328505932416386No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5580.12090169262369674No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5510.11938500472339947No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5470.11851832592322958No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5460.11830165622318711No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5110.11071821672170078No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5070.1098515379215309No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG4930.10681816212093635No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4870.10551814392068155No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)