FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927238

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927238
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439007
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48761.1106884400476529No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25050.5706059356684517No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15070.34327470860373527No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13650.3109289829091563No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG12550.285872434835891No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA12420.28291120642723233No Hit
GTCCTGGTGGTTACGGAAAATGGCTACGGTA11800.26878842478593734No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11670.2658271963772787No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10280.23416483108469796No Hit
GATGTTGCTCACGCGAACTCCGTGGACGAAG8350.1902019785561506No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7600.17311796850619693No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7350.1674232984895457No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7250.16514543048288524No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7150.16286756247622475No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7150.16286756247622475No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC7000.15945076046623402No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6450.14692248642960135No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6430.14646691282826924No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6270.14282232401761247No Hit
TGTGCAGCTCGCACCAAAACCGTGAACGCGG6160.14031666921028593No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6140.13986109560895385No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG5570.12687724797098907No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5560.12664946117032302No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5300.12072700435300576No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5160.11753798914368108No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG5090.11594348153901875No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4890.11138774552569776No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG4840.11024881152236753No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4770.1086543039177052No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4770.1086543039177052No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4770.1086543039177052No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4700.10705979631304284No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)