FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007927240

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927240
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463379
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25880.5585061040746343No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22230.47973688924185176No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16200.349605830216734No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14750.318313950351656No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA13900.29997043456867917No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13740.2965175374801189No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG13120.28313756126194756No Hit
GTCCTGGTGGTTACGGAAAATGGCTACGGTA12380.267167912227356No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11660.2516298753288345No Hit
GATGTTGCTCACGCGAACTCCGTGGACGAAG9040.195088685503659No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8530.18408257603387293No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8210.17717678185675223No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8040.1735080787001569No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC7580.16358099957054592No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7570.1633651935025109No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7500.16185455102626575No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7130.15386972650897No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6760.1458849019916742No Hit
TGTGCAGCTCGCACCAAAACCGTGAACGCGG6750.1456690959236392No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6540.14113716849490374No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG6530.14092136242686873No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6130.1322891197054679No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5630.12149881630371684No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5610.1210672041676468No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG5470.11804591921515649No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5440.11739850101105143No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5400.11653527673891136No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5370.11588785853480629No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG5240.113082379650351No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5180.11178754324214088No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5150.11114012503803583No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4970.10725561581340544No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4790.10337110658877506No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4770.10293949445270502No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)