FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927244

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927244
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483145
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22710.4700452245185193No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16550.34254726841838373No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9570.1980771817984249No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9530.19724927299257988No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6750.13970961098634985No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5370.11114675718469612No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG4920.10183278311893945No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)