FastQCFastQC Report
Wed 31 May 2023
EGAF00007927252

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927252
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419354
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46521.109325295573668No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT43101.0277712863118034No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18660.44497012070947217No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG17220.4106315904939502No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG14880.354831478893727No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12660.30189291147813063No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12240.29187750683193675No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG11020.2627851409548973No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8620.2055542572623607No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7980.19029268827768425No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG7440.1774157394468635No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA7150.170500341000682No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6550.15619262007754783No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6290.14999260767752304No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5470.13043872241590637No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5380.12829256427743624No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5380.12829256427743624No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5110.1218540898620259No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG4660.11112329916967527No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4290.10230020460040921No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)