FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927254

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927254
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443384
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT45671.0300326579218013No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22380.5047543438644606No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19490.4395738231420168No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG18300.4127347851974812No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG15790.35612471356656983No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13450.3033487902134493No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG13100.29545495552387996No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG12360.27876513360879057No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8270.18652003680782345No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8220.185392346137885No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG7900.17817512585027875No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA7340.16554499034696787No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG7110.1603576132652509No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6690.1508850116377677No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6400.14434440575212457No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5950.13419518972267833No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5940.13396965158869062No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5820.1312631939808383No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5690.12833119823899827No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4710.10622846110820416No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4510.1017176984284503No Hit

[OK]Adapter Content

Adapter graph