FastQCFastQC Report
Sun 21 May 2023
EGAF00007927262

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927262
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417129
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20920.5015235095138434No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14540.348573223151591No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10530.25243989269506556No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC10200.2445286709866732No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9960.23877505519875147No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8070.19346533086886789No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6710.1608615080706448No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5760.13808677891012133No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5450.13065502518405578No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5320.1275384832989315No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5270.12633981334311448No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5250.1258603453607877No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5240.12562061136962427No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5100.1222643354933366No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4840.11603125172308806No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4700.11267497584680039No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4610.11051736992632975No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4410.10572269010306165No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4350.10428428615608121No Hit
GCTGCATCTACCTCCGCCAAAAGCATCGGCA4250.10188694624444715No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4220.10116774427095694No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4210.10092801027979355No Hit

[OK]Adapter Content

Adapter graph