FastQCFastQC Report
Sun 21 May 2023
EGAF00007927264

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927264
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421209
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20450.48550719476554394No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14870.3530313929664371No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC10570.2509443055585232No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10220.24263489146718137No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9280.22031817933614906No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7870.18684311113960053No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6810.16167745703439387No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6160.14624568800761617No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5630.13366286095501284No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5610.13318803729265044No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5600.13295062546146924No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5590.13271321363028807No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5340.12677791785075818No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5100.1210800339024095No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5040.11965556291532232No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4900.11633179727878559No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4600.10920944234334973No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4230.10042520458964552No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)