FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927266

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927266
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences404457
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39930.9872495716479132No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14730.3641919907431445No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC10080.24922303236190746No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10030.2479868070029694No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9030.22326229982420875No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7810.19309840106612075No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6430.15897858115943103No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6090.1505722487186524No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5230.12930917254491825No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5210.12881468240134303No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4980.12312804575022808No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4860.12016110488877679No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4850.11991385981698921No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA4840.1196666147452016No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4730.11694691895553792No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4370.10804609637118409No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4300.10631538086867083No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4210.10409017522258239No Hit
GTAGGCTCCGTGTTCAAAGAAATCATTAACC4180.10334844000721956No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4130.10211221464828152No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4070.10062874421755588No Hit

[OK]Adapter Content

Adapter graph