FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927267

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927267
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471350
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG16440.34878540362787736No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG16100.34157208019518404No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG15360.32587249390049855No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12460.2643470881510555No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT11230.23825182985042961No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10860.23040203670308687No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10700.22700753155829004No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG10640.2257345921289912No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8280.1756656412432375No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7020.14893391322796223No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6920.1468123475124642No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4990.10586612920335206No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)