FastQCFastQC Report
Wed 31 May 2023
EGAF00007927268

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927268
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471350
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22910.4860507054206004No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16600.35217990877267424No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG16560.351331282486475No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG15930.3379654184788374No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12960.27495491672854566No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12280.260528269863159No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11270.23910045613662884No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11180.2371910469926806No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10670.22637106184364061No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8750.1856370001060783No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7270.1542378275167073No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6770.14362999893921716No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6040.12814256921608147No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5770.12241434178423677No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5020.10650259891800148No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4890.10374456348785403No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4830.10247162405855521No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4810.1020473109154556No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)