FastQCFastQC Report
Wed 31 May 2023
EGAF00007927269

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927269
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455952
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG15570.3414833140330561No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG15360.33687756605958524No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG14650.3213057514826122No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11860.26011509983507036No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10970.2405955012808366No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG10760.23598975330736569No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10620.2329192546583851No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10310.2261202933642138No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7820.1715092816787732No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6540.14343615117380779No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6110.13400533389479594No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4610.10110713408428956No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4580.10044917008807945No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)