FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927270

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927270
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455952
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47821.048794609958943No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15630.34279924202547635No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG15620.3425799206934063No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG15270.33490367407095484No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12180.2671333824613117No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11560.2535354598729691No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10890.23884093062427622No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10780.23642839597150578No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10620.2329192546583851No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8670.19015159490472683No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6900.1513317191283293No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6000.1315927992420255No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5860.1285223005930449No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5400.11843351931782294No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4970.1090027020388111No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4900.1074674527143208No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)