FastQCFastQC Report
Wed 31 May 2023
EGAF00007927276

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927276
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435621
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48411.1112871050752835No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10560.2424125558685187No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5310.12189494996797676No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5050.11592645900909276No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4690.10766239460448417No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)