FastQCFastQC Report
Wed 31 May 2023
EGAF00007927280

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927280
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483065
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG52581.0884663554594103No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32030.6630577665531554No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA20370.42168238228809785No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16280.3370146874644199No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14360.29726848353741214No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12000.24841377454379843No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10300.2132218231500937No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9080.18796642273814082No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8470.1753387225321644No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7950.1645741256352665No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6330.13103826607185368No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5970.12358585283553973No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5960.12337884135675324No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5790.11985964621738275No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5610.11613343959922579No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5570.11530539368407978No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5460.1130282674174283No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4890.10122861312659787No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)