FastQCFastQC Report
Wed 31 May 2023
EGAF00007927286

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927286
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488377
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40350.8262059843113005No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC10430.21356452085171906No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9000.18428386267166555No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8440.17281731121653968No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8300.1699506733527582No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8080.16544595670967305No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA7810.1599174408295231No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7530.15418416510196017No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6470.13247962127618623No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6380.13063678264946957No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6260.12817966448051402No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6250.12797490463310107No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6220.12736062509086218No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6170.12633682585379738No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5970.12224162890553815No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5880.12039879027882147No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5680.11630359333056224No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACC5460.11179887668747711No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC5340.10934175851852156No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5260.10770367973921785No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5080.10401800248578455No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)