FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927288

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927288
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528794
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA40530.7664610415398057No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA21280.40242514098117604No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17670.33415659027901223No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14730.27855838001187605No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13510.2554870138466019No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC11210.21199181533829808No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC9350.17681743741419154No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9320.17625010873799626No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8550.1616886727156511No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6860.12972915728998438No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6770.12802717126139856No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5680.10741422935963722No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5520.10438847641992913No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5340.10098450436275752No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)