FastQCFastQC Report
Wed 31 May 2023
EGAF00007927289

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927289
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501491
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT18480.36850112963143905No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC15540.30987594991734646No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13360.26640557856471997No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12580.25085195945689953No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG9760.19461964422093317No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9430.18803926690608605No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA9250.18444997018889672No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8810.17567613376910055No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7920.15792905555633102No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6220.12403014211620947No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6110.12183668301126041No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5780.11525630569641329No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5080.10129792957401029No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)