FastQCFastQC Report
Sun 21 May 2023
EGAF00007927290

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927290
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501491
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41170.8209519213704732No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA37950.7567433912074195No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19500.388840477695512No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17100.34098318813298745No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12360.24646504124700144No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC10340.20618515586520994No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9420.18783986153290885No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC9230.18405115944254233No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8080.16111954152716598No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6260.1248277636089182No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6240.12442895286256382No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5890.11744976480136232No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5300.10568484778390838No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)