FastQCFastQC Report
Wed 31 May 2023
EGAF00007927294

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927294
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509510
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24800.48674216403996No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16390.32168161566995745No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13130.25769857313889816No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13080.2567172381307531No Hit
CACGCAGAACTGAAATCCCTGACCGGTGCGG11180.21942650782124No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10570.20745422072187006No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG9820.19273419559969382No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8710.17094855841887302No Hit
GTCCAGCGTGTTGCAAAACTGCGCGACGAAA8570.1682008203960668No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7700.1511255912543424No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7430.14582638221035896No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6820.133854095110989No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6760.1326764931012149No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6750.13248022609958587No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6390.12541461404094129No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6350.12462954603442522No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6040.11854526898392574No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG5240.10284390885360445No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)