FastQCFastQC Report
Sun 21 May 2023
EGAF00007927295

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927295
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484966
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15630.32229063480738857No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11850.24434702638947886No Hit
CAGAGACAGGGTGGAATCGGCGTAAATTGCGTCACGCTGTTTGC10810.22290222407344018No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10210.21053022273726404No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10200.21032402271499445No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9680.19960162155697514No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT9340.19259082079980866No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8560.17650721906277966No Hit
CGGGTGCAGAGTCTGAGCGAAACCGCTGTTCAGGGACTGGGTGA7600.15671201692489783No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6620.1365044147424768No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6450.13299901436389355No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6410.13217421427481515No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5500.11341001224828133No Hit
CGCCTGCACGGAAGCCAGGTCACGGCCGAAATCGTCGCTCGCCA5240.10804881166927166No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5170.10660541151338444No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4910.10124421093437477No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG4890.10083181088983559No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)