FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927296

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927296
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484966
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40030.8254186891452184No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25260.5208612562530157No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15380.3171356342506485No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12960.2672352288614047No Hit
CACGCAGAACTGAAATCCCTGACCGGTGCGG10500.21651002338308253No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10070.2076434224254896No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG9510.1960962211783919No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8490.17506381890689246No Hit
GTCCAGCGTGTTGCAAAACTGCGCGACGAAA7400.1525880164795058No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7250.14949501614546173No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6870.14165941529921686No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6640.136916814787016No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5970.12310141329495262No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5840.12042081300544781No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5750.11856501280502138No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5690.11732781267140377No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5560.11464721238189893No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5000.1031000111348012No Hit
CGCCTGAAGGGTCTGGCCCTGCAGCGCCAAG4960.1022752110457228No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)