FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927297

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927297
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527894
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8660.16404808541108631No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7980.1511667114988994No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7440.14093738515686863No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6490.12294134807366632No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6100.11555350127108852No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5530.10475587902116713No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)