FastQCFastQC Report
Sun 21 May 2023
EGAF00007927302

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927302
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540831
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT53170.98311672222931No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28200.5214198150623762No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23250.4298939964610017No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC20680.3823745310457426No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15510.2867808982843069No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14550.26903043649494945No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13740.25405348436017905No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC13600.2514648753492311No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13380.24739706118917No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12540.23186540712348222No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11620.21485454790868128No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG9680.178983823042688No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG9490.17547071081354434No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9380.1734368037335138No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8260.15272793164593007No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8230.15217322971501263No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8090.14958462070406467No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG8050.1488450181295081No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7980.14755071362403413No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7910.14625640911856014No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7610.14070938980938594No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7560.13978488659119023No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7490.13849058208571624No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7460.13793588015479882No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7330.13553217178749No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7160.1323888608456246No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6940.12832104668556352No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6900.12758144411100697No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6750.12480793445641984No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6470.1196307164345239No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6380.11796661064177165No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5700.1053933668743101No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5700.1053933668743101No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5500.10169535400152728No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5420.10021614885241416No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)