FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927303

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927303
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515016
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA25950.5038678409991145No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA23750.4611507215309816No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT21140.41047268434378736No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC20580.39959923575189893No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19290.3745514702455846No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14620.2838746757382295No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11750.22814825170480144No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11680.22678907063081538No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11280.21902232163660934No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11260.21863398418689906No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC10940.21242058499153427No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG9080.1763052021684763No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9060.17591686471876603No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT8460.16426674122745702No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC8300.1611600416297746No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7670.14892741196390014No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7630.14815073706447954No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7130.13844230082172204No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6990.13572393867374993No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6810.13222890162635725No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6670.12951053947838514No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6560.1273746835049785No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6410.12446215263215124No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6350.12329714028302033No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6250.12135545303446882No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6190.12019044068533793No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6040.11727790981251068No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5960.11572456001366947No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5510.10698696739518772No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5420.10523944887149136No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5390.10465694269692592No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5350.10388026779750532No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5250.10193858054895381No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)