FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927305

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927305
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences552606
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA28980.5244242733520809No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA24330.44027752141670556No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT23660.4281531507077376No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC21770.3939515676630366No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21220.3839987260362718No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15700.284108388254923No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13210.23904915979920593No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12010.2173338689771736No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11850.2144384968675693No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11750.2126288892990666No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC11380.20593334129560664No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9730.17607481641531217No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG9700.17553193414476137No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT9650.17462713036051003No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8630.15616913316178255No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC8410.15218799651107662No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8020.1451305269939161No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7860.1422351548843118No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7630.1380730574767556No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7340.13282519552809777No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7330.1326442347712475No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7230.1308346272027448No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7170.1297488626616432No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG7150.12938694114794264No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7060.12775829433629024No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6840.1237771576855843No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6690.12106274633283025No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6680.12088178557597999No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6080.11002414016496383No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT6040.10930029713756276No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5830.10550012124370708No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5790.104776278216306No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5600.10133802383615088No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)