FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927308

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927308
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544261
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14670.2695397980013266No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12390.2276481320542901No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9880.1815305524371579No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7510.1379852680974753No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7360.135229237443065No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA7120.13081958839600852No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6800.12494005633326657No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6260.11501834597738954No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5990.11005749079945101No Hit
GCTGCGGTCAAGCAGGCCCAGGCGGCATATG5540.10178939883622012No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)