FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927309

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927309
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences555254
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9560.17217345575178206No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9320.16785110958228128No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7580.13651409985340043No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6800.1224664748025228No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6220.11202080489289587No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5780.1040965035821444No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5710.10283581928270664No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)