FastQCFastQC Report
Wed 31 May 2023
EGAF00007927311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927311
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537491
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18220.33898242017075636No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG14580.2712603559873561No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12900.24000401867194054No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10400.19349161195257222No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG9770.18177048545929142No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8940.16632836642846113No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8630.16056082799525948No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8410.15646773620395504No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7820.1454908082181841No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7620.14176981568063465No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7570.1408395675462473No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6920.12874634179921152No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6720.12502534926166203No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6190.11516471903715597No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5960.1108855776189741No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5800.10790878358893452No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5620.10455989030514No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)