FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927312

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927312
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537491
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44970.8366651720679975No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17760.3304241373343926No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG15880.2954468074814276No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15540.2891211201675935No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG14750.2744231996442731No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11000.20465458956522065No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9790.18214258471304637No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9760.18158443583241393No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9250.17209590486166282No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9210.17135170635415292No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8960.16670046568221608No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7840.14586290747193909No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7830.1456768578450616No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7670.14270006381502204No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7550.14046746829249235No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6890.12818819291857908No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6400.1190717612015829No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6330.1177694138134406No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5910.10995532948458672No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5760.10716458508142462No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG5550.1032575429169977No Hit

[OK]Adapter Content

Adapter graph