FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927314

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927314
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517551
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14290.2761080550515794No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14120.2728233546065992No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11920.23031546649508938No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10990.2123462228843148No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10550.20384464526201282No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8410.16249606318990786No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8280.15998423343786408No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8070.15592666229994726No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7520.14529969027206982No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7200.13911672472857747No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7030.13583202428359717No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6560.1267507936415928No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6520.12597792294865628No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG6190.11960173973192981No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5830.11264590349550091No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5340.1031782375070283No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5210.10066640775498452No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)