FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927315

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927315
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487852
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10690.21912383263776716No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10420.21358936726712197No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10060.2062100801062617No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7130.14615088182481573No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7070.144921000631339No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6780.13897657486286824No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5740.11765863417593861No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5640.11560883218681074No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5490.11253412920311898No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5450.11171420840746785No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5330.10925444602051441No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5220.10699966383247378No Hit
TGGACGACCGCCGCCGCGACCACGACCGCGGCCACGACCGCGAC5110.10474488164443314No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)