FastQCFastQC Report
Sun 21 May 2023
EGAF00007927316

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927316
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487852
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41670.8541524888695753No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13990.2867672982789862No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10660.21850889204102883No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10390.21297442667038363No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10130.20764494149865123No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7790.15967957495305954No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7280.14922558480850748No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7180.14717578281937965No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6960.14266621844329838No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6640.13610685207808926No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6310.12934250551396737No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6110.12524290153571163No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG6050.12401302034223494No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5840.11970843616506645No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5340.10945942621942721No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5020.10290005985421809No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)