FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927318

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927318
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495752
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41760.8423566622020687No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14370.28986267327211995No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10910.22006971227549257No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9720.19606577482289533No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9600.193645209701625No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8350.16843098968839257No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8090.16318643192564022No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7580.15289903016024142No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7330.14785618615759494No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7100.14321676967516014No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6860.13837563943261952No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6530.13171908534912619No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5820.11739740838161015No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG5590.11275799189917539No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5520.11134599557843439No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5150.10388258645451759No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)