FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927319

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927319
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523704
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT20680.3948795502803111No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC17350.3312940134121565No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT16670.31830957945709787No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16110.3076165161999908No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC15570.29730534805920905No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG13690.2614072071246353No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10990.20985136642072624No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT10990.20985136642072624No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10400.19858546048913128No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10090.19266608618608985No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10030.1915204008371141No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9950.1899928203718131No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9820.18751050211569895No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9540.18216397048714542No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9520.18178207537082014No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9170.17509891083512824No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9020.17223469746268885No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7090.13538181873730198No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6230.11896032873531612No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6170.11781464338634037No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT6050.11552327268838886No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG6020.11495043001390097No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5540.10578494722209492No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5290.10101125826802927No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)