FastQCFastQC Report
Wed 31 May 2023
EGAF00007927320

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927320
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523704
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA43460.8298580877747735No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA22870.4366970655179262No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22490.4294410583077463No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA20400.3895330186517575No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19190.3664283641140797No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT17810.3400776010876373No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14350.27400974596336863No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG14290.27286406061439283No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10880.20775094328093735No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10850.20717810060644942No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC10790.20603241525747368No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10600.2024044116523838No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10600.2024044116523838No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10370.19801261781464338No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9930.18961092525548784No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7500.14321066862196966No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6870.1311809724577242No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6840.13060812978323633No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6770.12927149687609796No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA6590.1258344408291707No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6390.12201548966591816No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC6360.12144264699143027No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5700.10884010815269693No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5690.10864916059453432No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5500.10502115698944442No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5450.10406641919863129No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5340.10196599605884239No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)