FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927321

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927321
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499502
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT19830.39699540742579614No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC16620.332731400474873No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT16480.3299286088944589No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15120.30270149068472196No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14570.29169052376166665No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG12710.2544534356218794No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT11400.2282273144051475No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10880.21781694567789517No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9610.19239162205556734No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9510.19038962806955728No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9250.18518444370593112No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9030.18078005693670895No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8840.17697626836328983No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8680.17377307798567374No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8450.16916849181785057No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8070.16156091467101233No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8020.16055991767800729No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6870.13753698683889154No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT5860.11731684758018988No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5640.11291246081096772No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5540.11091046682495766No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5370.10750707704874055No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5310.1063058806571345No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5290.10590548185993248No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5060.10130089569210934No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)