FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927322

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927322
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499502
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42130.8434400663060408No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA40010.8009977938026275No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA21120.42282112984532594No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20180.40400238637683134No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19700.394392815243983No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA18980.3799784585447105No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT17550.3513499445447666No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG13390.26806699472674783No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC10500.21020936853105693No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10190.20400318717442573No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9560.1913906250625623No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9530.19079002686675928No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9150.18318244971992104No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8770.1755748725730828No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8200.1641635068528254No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7350.14714655797173987No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6440.12892841269904826No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6290.12592542172003315No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5880.11771724637739188No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5810.11631585058718484No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5740.1149144547969778No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5730.11471425539837678No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5510.11030986862915465No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5510.11030986862915465No Hit

[OK]Adapter Content

Adapter graph