FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927323

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927323
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532208
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT20800.39082463999037975No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC17970.337649941376304No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT17700.3325767369148904No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16270.3057075429155518No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC15410.2895484472236419No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG13740.2581697381474912No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT11660.21908727414845322No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11390.21401406968703965No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10630.19973393861046806No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9970.18733277214923488No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9940.1867690827646334No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9890.1858296004569642No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9800.18413853230315969No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9710.18244746414935514No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9370.1760589844572047No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8970.16854312599585125No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8790.1651609896882422No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6850.12870907615067795No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6470.12156901061239214No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6110.11480473799717404No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT6000.11273787692030184No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5890.11067101584342964No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5800.1089799476896251No Hit
ACCCTGGTGCAGACCCAGGACTGGAGACAGTTCCGGCATGGACG5760.10822836184348976No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5550.10428253615127919No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)