FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927324

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927324
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532208
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA44150.8295628776718876No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA23660.4445630279890569No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22190.41694224814358294No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20530.3857514355289661No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19830.37259868322159756No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT18910.35531220876048464No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG14830.27865045245467934No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14290.2685040435318522No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11140.20931665814869377No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC11090.20837717584102455No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10590.19898235276433274No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10570.19860655984126505No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10560.1984186633797312No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9760.18338694645702433No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9520.17887743138021225No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7510.14111024261191113No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7300.13716441691970058No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6860.12889697261221175No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6820.12814538676607642No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6420.12062952830472295No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA6330.11893846015091844No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6280.11799897784324925No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC6190.11630790968944474No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5950.11179839461263265No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC5500.10334305384361No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5490.10315515738207619No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)