FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927326

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927326
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518375
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22420.4325054256088739No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13690.26409452616349166No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12430.23978779840848805No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11960.23072100313479624No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10610.2046780805401495No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10160.19599710634193393No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9940.1917530745116952No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6460.12462020737882806No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6280.12114781769954183No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA5920.11420303834096938No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5440.10494333252953944No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)