FastQCFastQC Report
Sun 21 May 2023
EGAF00007927329

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927329
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488503
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18390.3764562346597667No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16810.34411252336219017No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12830.26263912401766215No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6720.1375631265314645No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6570.13449252102853002No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5450.11156533327328594No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5290.10829002073682249No Hit
CGCGGACATCTGGGTCGGCTGCATCAGGCGTTCACCAGAATCGA5210.10665236446859078No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)