FastQCFastQC Report
Wed 31 May 2023
EGAF00007927330

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927330
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488503
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41210.8435976851728649No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38750.7932397549247395No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13030.26673326468824143No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12260.25097082310651114No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6690.1369490054308776No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6150.12589482562031348No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5690.1164783020779811No Hit
GAGAGCTCTCGTAAAGCGTACGATCACAACT5490.1123841614074018No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5030.1029676378650694No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)