FastQCFastQC Report
Sun 21 May 2023
EGAF00007927332

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927332
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520980
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT43300.8311259549310914No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14150.27160351644976777No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13680.26258205689277897No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13180.2529847594917271No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7880.15125340704057738No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6820.1309071365503474No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5880.11286421743636993No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5870.1126722714883489No Hit
GAGAGCTCTCGTAAAGCGTACGATCACAACT5830.11190448769626472No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5520.10595416330761258No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)